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Bio-Dictionary-based Annotations
of Complete Genomes

Annotations for 77 genomes available as of: Wed July 31 23:42:23 EST 2002

12 Archaea  /   57 Bacteria  /   7 Eukaryotes  /   1 Viruses (1new label)

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ANNOTATIONS of ARCHAEAL GENOMES

Methanococcus jannaschii DSM 2661
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Methanobact. thermoautotroph. Delta H
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Archaeoglobus fulgidus DSM 4304
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Pyrococcus horikoshii OT3
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Aeropyrum pernix K1
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Pyrococcus abyssi GE5
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Halobacterium sp. NRC-1
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Sulfolobus sulfataricus P2
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Thermoplasma acidophilum
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Pyrobaculum aerophilum
Status: stable label Release Date: January 29, 2002
BD based on SP/TrEMBL of: May 14, 2001
Thermoplasma volcanium GSS1
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Sulfolobus tokodaii 7
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001


ANNOTATIONS of BACTERIAL GENOMES

Haemophilus influenzae KW20
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mycoplasma genitalium G-37
Status: stable label        Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Synechocystis sp. PCC 6803
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mycoplasma pneumoniae M129
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Escherichia coli K12-MG165
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Helicobacter pylori 26695
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Baccilus subtilis 168
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Borrelia burgdorferi B31
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Aquifex aeolicus VF5
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mycobacterium tuberculosis H37Rv
Status: stable label Release Date: August 27, 2001
BD based on SP/TrEMBL of: May 14, 2001
Treponema pallidum Nichols
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Chlamydia trachomatis serovar D
Status: stable label Release Date: September 27, 2001
BD based on SP/TrEMBL of: May 14, 2001
Rickettsia prowazekii Madrit E
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Helicobacter pylori J99
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Chlamydophila pneumoniae CWL029
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Thermotoga maritima MSB8
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Lactococcus lactis IL1403
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Deinococcus radiodurans R1
Status: stable label Release Date: August 27, 2001
BD based on SP/TrEMBL of: May 14, 2001
Ureaplasma urealyticum serovar 3
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Campylobacter jejuni NCTC11168
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Chlamydophila pneumoniae AR39
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Chlamydia trachomatis Mo Pn Nigg
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Neisseria meningitidis MC58 (sergrp B)
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Yersinia pestis CO92
Status: stable label Release Date: October 04, 2001
BD based on SP/TrEMBL of: May 14, 2001
Neisseria meningitidis Z2491 (sergrp A)
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Rhizobium sp. NGR234
Status: stable label Release Date: November 22, 2001
BD based on SP/TrEMBL of: May 14, 2001
Agrobacterium tumefaciens C58
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Bacillus halodurans C-125
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Buchnera sp. APS
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Clostridium acetobutylicum ATCC 824D
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Caulobacter crescentus
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Chlamydia pneumoniae J138
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Streptococcus pneumoniae R6
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Escherichia coli O157:H7 EDL933
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Escherichia coli O157:H7 Sakai
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Listeria innocua Clip11262, rhamnose-negative
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Listeria monocytogenes EGD-e
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
 
                   
 
Mycobacterium leprae TN
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mesorhizobium loti MAFF303099
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mycoplasma pulmonis
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mycobacterium tuberculosis CDC 1551
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Nostoc sp. PCC 7120
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Pseudomonas aeruginosa PAO1
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Pasteurella multocida Pm70
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Rickettsia conorii Malish 7
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Ralstonia solanacearum GMI1000
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Staphylococcus aureus Mu50
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Staphylococcus aureus N315
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Sinorhizobium meliloti 1021
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Streptococcus pneumoniae TIGR4
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Streptococcus pyogenes SF370 (M1)
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Salmonella enterica (serovar typhi)
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Salmonella typhimuriumLT2 SGSC1412
Status: stable label Release Date: December 17, 2001
BD based on SP/TrEMBL of: May 14, 2001
Vibrio cholerae serotype O1, Biotype El Tor,strain N16961
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Xylella fastidiosa CVC 8.1.b clone 9.a.5.c
Status: stable label Release Date: December 31, 2001
BD based on SP/TrEMBL of: May 14, 2001
Brucella melitensis
Status: stable label Release Date: January 29, 2002
BD based on SP/TrEMBL of: May 14, 2001
Clostridium perfringens
Status: stable label Release Date: January 29, 2002
BD based on SP/TrEMBL of: May 14, 2001


ANNOTATIONS of EUKARYOTIC GENOMES

Saccharomyces cerevisiae S288C
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Caenorhabditis elegans
Status: stable label Release Date: October 1, 2001
BD based on SP/TrEMBL of: May 14, 2001
Drosophila melanogaster
Status: stable label Release Date: July 18, 2001
BD based on SP/TrEMBL of: May 14, 2001
Arabidopsis thaliana
Status:                 Release Date:
BD based on SP/TrEMBL of:
Homo sapiens
Status: stable label Release Date: October 16, 2001
BD based on SP/TrEMBL of: May 14, 2001
Mus musculus
Status: stable label Release Date: August 28, 2001
BD based on SP/TrEMBL of: May 14, 2001
Plasmodium falciparum
Status: stable label Release Date: September 20, 2001
BD based on SP/TrEMBL of: May 14, 2001
Fugu rubripes
Status: stable label Release Date: January 18, 2002
BD based on SP/TrEMBL of: May 14, 2001


ANNOTATIONS of VIRAL GENOMES

Human herpes virus 5 (AD169 & Toledo & Towne)
Status: new label Release Date: July 12, 2002
BD based on SP/TrEMBL of: May 14, 2001
 



References:
  • Rigoutsos, I., T. Huynh, A. Floratos, L. Parida and D. Platt, Dictionary-driven Protein Annotation. IBM TJ Watson Research Center Technical Report, RC 22262. November 2001.
  • Rigoutsos, I., A. Floratos, C. Ouzounis, Y. Gao and L. Parida, Dictionary Building Via Unsupervised Hierarchical Motif Discovery in the Sequence Space of Natural Proteins. Journal of Proteins: Structure, Function and Genetics, 37(2), November 1999.
  • Rigoutsos, I., Y. Gao, A. Floratos and L. Parida, Building Dictionaries Of 1D and 3D Motifs by Mining the Unaligned 1D Sequence of 17 Archaeal and Bacterial Genomes. Proceedings Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB '99), pp. 223-233, Heidelberg, Germany. August 1999.
  • Floratos, A., I. Rigoutsos, L. Parida, G. Stolovitzky and Y. Gao, Sequence Homology Detection Through Large-Scale Pattern Discovery. Proceedings 3rd Annual ACM International Conference on Computational Molecular (RECOMB '99), Lyon, France. March 1999.



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    Last modification to this page: Wednesday, July 31, 2002