IBM Bioinformatics Group - Tools & Content

Options Parameters Equivalency Sets (type or paste) SELECT A SET TO USEChemical nature of AAStructural character of AA  Discovery Using Equivalences  Exact Discovery   Max Brackets:  L:  W:  K:  Q:  Case sensitive! Seq Version  Remove Overlaps  Upper Case  Hydropathy Coloring  Only amino acid characters  Only nucleic acid characters   Accept all characters  Input Sequences (type or paste) 30K Netscape limits SELECT A SAMPLEHemoglobin set References: Parida, L., A. Floratos and I. Rigoutsos, MUSCA: An Algorithm for Constrained Alignment of Multiple Data Sequences. Proceedings 9th Workshop on Genome Informatics, Tokyo, Japan. December 1998. Parida, L., A. Floratos and I. Rigoutsos, An Approximation Algorithm for Alignment of Multiple Sequences Using Motif Discovery. Journal of Combinatorial Optimization, 3(2/3): 247-275, July 1999.