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Reference: A pattern-based method for the identification of microRNA-target sites
and their corresponding RNA/RNA complexes T. Huynh, K. Miranda, Y. Tay, Y.-S. Ang,
W.-L. Tam, A. M. Thomson, B. Lim, I. Rigoutsos Cell, Vol 126, 1203-1217, 22 September 2006.
November 11, 2006: Download pre-compiled predictions Follow the links below to access predictions for the organism of your choice. NOTE: (1) these predictions were generated using stringent parameter settings (listed at the top of each of the files). (2) if you wish to generate more sensitive predictions, you should use our interactive interface or our batch request utilities . Read here about Terms and Conditions C. elegans 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) D. melanogaster 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) M. musculus 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) H. sapiens 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) We gratefuly acknowledge use of the Vienna RNA package to prepare these files (originally described in: Fast Folding and comparison of RNA secondary structures, Hofacker et al. Monatshefte fuer Chemie, Vol 125, 167-188, 1996) Do You Have Comments? Suggestions? Questions? Email us! For related work visit the pyknon page here Access the rest of the Web Tools by IBM's Bioinformatics & Pattern Discovery Group |