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If you make use of our batch script or of our precompiled data please cite the following publication:
A pattern-based method for the identification of microRNA-target sites and their corresponding RNA/RNA complexes T. Huynh, K. Miranda, Y. Tay, Y.-S. Ang, W.-L. Tam, A. M. Thomson, B. Lim, I. Rigoutsos Cell, Vol 126, 1203-1217, 22 September 2006. July 30, 2007 / updated utility for batch submission We have updated the batch submission utility to allow for the processing of very long sequences. Click here to download. March 21, 2007 / download utility for batch submission You can now download a utility that will allow you to run batch queries (i.e. many microRNAs against many candidate target sequences). It is very easy to install, set up and use. You can download the utility as well as information on how to use it by clicking here. The file has been compressed using the Windows zip program. Read here about Terms and Conditions November 11, 2006 / download pre-compiled predictions You can download RNA22 precomputed predictions predictions by following the links below. Note that these predictions were generated using stringent parameter settings (listed at the top of each of the files). To generate more sensitive predictions please use our interactive interface or the above batch request utility. Read here about Terms and Conditions C. elegans 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) D. melanogaster 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) M. musculus 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) H. sapiens 5' utr predictions (gzip-ped text file) 3' utr predictions (gzip-ped text file) We gratefuly acknowledge use of the Vienna RNA package to prepare these files (originally described in: Fast Folding and comparison of RNA secondary structures, Hofacker et al. Monatshefte fuer Chemie, Vol 125, 167-188, 1996) Do You Have Comments? Suggestions? Questions? Email us! For related work visit the pyknon page here Access the rest of the Web Tools by IBM's Bioinformatics & Pattern Discovery Group |