RNA22 prediction of novel microRNA precursors and their matures Reference: A pattern-based method for the identification of microRNA-target sites and their corresponding RNA/RNA complexes T. Huynh, K. Miranda, Y. Tay, Y.-S. Ang, W.-L. Tam, A. M. Thomson, B. Lim, I. Rigoutsos Cell, Vol 126, 1203-1217, 22 September 2006. Click here for access to the target prediction interface, batch submission utilities, and content. This instance of rna22 has been trained using the sequences in Rel. 7.1 of RFAM Input single sequence (fasta format): Sample sequence Human Mouse Output format: Fasta Tab separated Precursor pattern score threshold: 1 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 Mature pattern score threshold: 1 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 Minimum precusor length: 50 55 60 65 70 75 80 85 90 95 100 Maximum precursor length: 100 110 120 130 140 150 200 250 300 350 400       License Terms We gratefuly acknowledge use of the Vienna RNA Package originally described in: Fast Folding and comparison of RNA secondary structures, Hofacker et al. Monatshefte fuer Chemie, Vol 125, 167-188, 1996. Do You Have Comments? Suggestions? Questions? Email us! For related work visit the pyknon page here Access the rest of the Web Tools by IBM's Bioinformatics & Pattern Discovery Group

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